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Table 1 Castellaniella chromosomally integrated elements

From: Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface

Genome

Location of origin

Total predictions

Proportion GI (%)

Proportion ICE (%)

Proportion prophage (%)

Proportion IS (%)

HJPbin40

Non-ORR

15

87

0

0

0

65Phen

Non-ORR

22

32

9

18

5

DSM12141

Non-ORR

21

57

19

5

0

CCUG39790

Non-ORR

22

41

18

5

0

DR1149

Non-ORR

24

33

4

25

0

CD04

Non-ORR

26

46

8

15

0

NBRC101664

Non-ORR

23

43

13

4

0

 

AVG

21.86

49

10

11

1

 

SD

3.44

19

7

9

2

GW247-6E4

ORR

20

40

10

0

0

FW021bin21

ORR

20

25

15

20

5

FW104-12G02

ORR

27

26

41

7

0

FW104-16D08

ORR

27

41

11

11

7

FW104-7C03

ORR

27

41

0

11

4

FW104-7G2B

ORR

26

46

4

8

12

MT123

ORR

19

26

16

5

0

 

AVG

23.71

35

14

9

4

 

SD

3.82

9

13

6

4

  1. The total number of predictions made for each genome by IslandViewer4 as well as the percentage of these predictions further classified by additional annotation tools as being genomic islands (GIs), integrative and conjugative elements (ICEs), prophages or insertion sequences (ISs)